Bowtie tutorial || beginner ||

Published: 20 November 2020
on channel: Study Tech

5,199

------------------------------- Follow Transcriptome analysis pipeline ------------------------

------ Watch Download fastq(raw file-SRA) file from NCBI
   • SRA tool kit || installation to SRA file d...
   • SRA to fastq file conversion || SRA toolki...

------ Watch Fastq file quality check
   • Fastp | Install | Run | Paired end #bioinf...

------ Watch fastq to Bam file generation
   • Bowtie2 | Install | Build Index | Alignmen...

------ Watch the SAM to BAM file sort by Samtool
   • Samtools | Install | SAM to BAM conversion...

------ Watch BAM file to Count matrix generation
   • Featurecount | Install | BAM to Count matr...

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