Bash RC for systemwide run | Tutorial

Published: 20 August 2026
on channel: Study Tech

o run it any terminal from any directory you have to add some command in your bash.rc file

################# see where is you package tool

It may compile in the a selected diretory or

/home/alex/bioinfo/hisat2-2.2.0/hisat2

###### in the /usr/bin

/usr/bin

###### When you used "sudo apt-get install", it possibly installed in /usr/bin directory

export PATH=$PATH:/home/alex/bioinfo/hisat2-2.2.0

####### check in new terminal

hisat2

###### Fun fact is all the tools within this directory is accessible now

✉️Email- graviti.work@outlook.com

Email me for further contact

📢 Save my video URL on a notepad in your lab computer. So that you can get this video

📢 Subscribe to my Study tech youtube channel. Because it is free for you but it will help me a lot.

====================== Follow Transcriptome analysis pipeline =====================
------ Tutorial made the year 2024-2025
------ Learn Download fastq(raw file-SRA) file from NCBI
🎯   • SRA tool kit || installation to SRA file d...
🎯   • SRA to fastq file conversion || SRA toolki...
--- or this video

------ Learn Fastq file quality check
🎯   • Fastp | Install | Run | Paired end #bioinf...

------ Learn fastq to Bam file generation (Mapping/Alignment)
🎯   • Hisat2 Tutorial | Install | Build Index | ...
🎯   • Bowtie2 | Install | Build Index | Alignmen...

------ Learn the SAM to BAM file sort by Samtool
🎯   • Samtools | Install | SAM to BAM conversion...

------ Learn BAM file to Count matrix generation
🎯   • Featurecount | Install | BAM to Count matr...

====================== Subscribe to my channel, and learn complete RNAseq analysis

💻 System configuration
Procession- Intel i5 4th gen, 1.7 GHz, 4 cpu(or thread)
RAM-8GB
Boot and working drive- 256GB SSD
OS- Linux Mint 21.1 Cinnamon

📢 Guys, if you need any tutorial or help regarding Bioinformatics work, we will try to help you by Video or Chat.
Fill free to ask in the comment section.
If you are very new to Bioinformatics and have some very basic and silly questions. You are most welcome. Don't hesitate to ask us.
You can write in the comment section.

=========== Jump to

🏷️ Video specific tags
how to run software systemwide,
how to run tool systemwide,
how to run app systemwide,
how to run software any terminal,
how to run software any directory,

how to edit bashrc,
how to write bashrc,
bashrc,
bash,
🏷️ Channel tags

transcriptomics, genomics, RNAseq, DNAseq,fasta, fastq, bam, sam,
quality control and trimming,
bioinformatic tutorial, tutorial,bioinfo,
tool, software, package, linux, ubuntu
synopsis, script, code, terminal,prompt, command,

sequence alignment, sequence, bioinformatics training, file format, bioinformatics projects,

#ncbi #genomics #beginners #tutorial #howto #omics #research #biology #ngs #python

On this page of the site you can watch the video online Bash RC for systemwide run | Tutorial with a duration of hours minute second in good quality, which was uploaded by the user Study Tech 20 August 2026, share the link with friends and acquaintances, this video has already been watched 73 times on youtube and it was liked by 0 viewers. Enjoy your viewing!

13,324

276