Gene Expression Heatmap with Python

Published: 01 August 2021
on channel: Mike Saint-Antoine

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UPDATE: After watching this video again I noticed something about my fake dataset that is unrealistic and could be misleading. Typically when you have a normalized TPM dataset, the numbers will be floats (decimals), not integers. If you're looking at a gene expression dataset and it has only integers, that probably means it's a raw count dataset that hasn't been normalized yet. Sorry if this caused any confusion! I was just using this fake dataset as an example for the code, and didn't put a lot of effort into making it actually realistic.

Hi everyone! This video is about how to make a gene expression heatmap plot using Python.

All the code from my videos is available on my Github:
https://github.com/mikesaint-antoine/...

If you're are trying to catch up on the basics of Python, this is a great resource:

• Beginner Python Tutorials

Thanks for watching and let me know if you have any questions!

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